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GDC data
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17
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How to check the read length for all the TCGA data samples in GDC?
gdc
tcga
wes
gdc data
updated 6.0 years ago by
Sean Davis
21k • written 6.0 years ago by
Biologist
▴ 110
0
votes
1
reply
2.7k
views
r: vector memory exhausted (limit reached?)
TCGAbiolinks
Methylation
GDC data
Data prepare
4.3 years ago
ph.shimaasherif
• 0
0
votes
0
replies
821
views
Error in GDCprepare of TCGAbioloinks
TCGAbioloinks
GDC data
6.2 years ago
lawarde.ankita1
▴ 30
0
votes
0
replies
912
views
GDC RNA seq files (replicates?)
gdc data
TCGA
gdcdownload
5.3 years ago
coyoung
▴ 10
4 results • Page
1 of 1
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Comment: The difference when using Limma compare between 3 conditions vs 2 conditions
by
Chris
• 0
When using `arrayWeights()`, you mean the variability within the same group, is that correct? I alway run `arrayWeights()` because I naive …
Comment: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa
by
Sey R.
• 0
Thank you for your response
Comment: Different number of exons in reference genome affects DEXSeq analysis
by
Alejandro Reyes
★ 1.9k
Hi Alessia. Makes sense. Something I use often are the support levels from ENSEMBL and the annotation of principal isoforms. These substant…
Comment: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa
by
Michael Love
41k
Sorry, for questions about statistical analysis plan and interpretation of results, I recommend to work with a local statistician or someon…
Answer: Fold change calculation in Diffbind vs. DESEQ2?
by
Michael Love
41k
There was a recent DiffBind question on the support site that noticed the same thing, try searching recent DiffBind posts.
Votes
Comment: Why p value inconsistent when using different number of pathway score?
Nominations for Bioconductor Awards 2024!
Answer: Improving the design matrices vignette in RNAseq123
Answer: Perform gene set enrichment analysis using fgsea on two conditions that don't ha
Answer: Perform gene set enrichment analysis using fgsea on two conditions that don't ha
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